PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006947
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 83aa    MW: 9150.19 Da    PI: 10.0126
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-53375PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-091258246
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     g+WT+   + + +a + + ++   +W+ +a+ +g g+t++++k ++  
        Lsa006947 12 GSWTAKQNKAFEKALAVFDKDtpdRWHNVAKAVG-GKTAEEVKQHYEV 58
                     89********************************.**********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.883964IPR017884SANT domain
SMARTSM007171.6E-81062IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-61266IPR009057Homeodomain-like
SuperFamilySSF466892.42E-131268IPR009057Homeodomain-like
PfamPF002492.9E-71257IPR001005SANT/Myb domain
CDDcd001671.18E-61460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MASSSMSSRG SGSWTAKQNK AFEKALAVFD KDTPDRWHNV AKAVGGKTAE EVKQHYEVLV  60
EDVKHIENGR VPFPNYRRTT GGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-38782378RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594360.12e-43PREDICTED: protein RADIALIS-like 1
RefseqXP_016513075.12e-43PREDICTED: protein RADIALIS-like 1
RefseqXP_007042177.13e-43DnaJ subfamily C member 2
SwissprotQ58FS37e-39RAD_ANTMA; Transcription factor RADIALIS
TrEMBLA0A061E6U23e-43A0A061E6U2_THECC; DnaJ subfamily C member 2
TrEMBLA0A103NSW72e-43A0A103NSW7_CYNCS; Homeodomain-like protein
STRINGPOPTR_0004s16270.15e-40(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-36RAD-like 1